Code for the paper: Epidemic-induced local awareness behavior inferred from surveys and genetic sequence data

This repository was written by Gergely Odor accompanies the paper "Epidemic-induced local awareness behavior inferred from surveys and genetic sequence data" by Gergely Odor and Marton Karsai. It contains tools to detect superspreading events in Amino Acid Collision Clusters (AACCs) and computes the Event Containment Scores (ECSs).